LOVD 2.0

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FS#47 - Monitor reference sequence version numbers

Attached to Project: LOVD 2.0
Opened by Raymond Dalgleish (rwmd) - Wednesday, 06 April 2011, 15:08 GMT+1
Task Type Feature Request
Category Backend / Core
Status Assigned
Assigned To Ivo F.A.C. Fokkema (ifokkema)
Operating System All
Severity Low
Priority Normal
Reported Version 2.0-31
Due in Version Undecided
Due Date Undecided
Percent Complete 0%
Votes 0
Private No


The Mutalyzer plugin for LOVD stopped working for the PLOD1 gene in one of my installations. The error message related to the transcript not being found. The underlying cause was that the RefSeq mRNA record had been updated from NM_000302.2 to NM_000302.3 and this no longer matched with the RefSeqGene record for the gene. It was simple to fix once I realised what had happened.

Could a feature be added to LOVD to track changes in reference sequence version numbers and inform the database manager?

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