LOVD 2.0

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FS#51 - Link to exon table during variant submission

Attached to Project: LOVD 2.0
Opened by Raymond Dalgleish (rwmd) - Wednesday, 31 August 2011, 15:09 GMT+1
Last edited by Ivo F.A.C. Fokkema (ifokkema) - Friday, 30 September 2011, 13:28 GMT+1
Task Type Feature Request
Category Backend / Core → Variant submission
Status Closed
Assigned To Ivo F.A.C. Fokkema (ifokkema)
Operating System All
Severity Low
Priority Normal
Reported Version 2.0-32b
Due in Version 2.0-33
Due Date 2011-09-30
Percent Complete 100%
Votes 0
Private No


LOVD creates tables (text and HTML) of exon coordinates which are stored in the /refseq sub-directory. It would be useful to provide a link to the HTML version of the table (to open in a new tab) on the variant submission form. At present, there is a link adjacent to the DNA change box (just below the "Check variant with Mutalyzer 2.0" button) that allows access to the HTML view of the cDNA and intron sequence. A link to the exon table would be useful too because most of the time I just want to work out (or confirm) the exon in which the variant lies. The data displayed in the table are a more convenient source of information for this task.
This task depends upon

Closed by  Ivo F.A.C. Fokkema (ifokkema)
Friday, 30 September 2011, 13:28 GMT+1
Reason for closing:  Implemented
Comment by Ivo F.A.C. Fokkema (ifokkema) - Thursday, 01 September 2011, 13:59 GMT+1
Since the wanted information can be taken from the reference sequence also as you said, I won't prioritise this request, but I will see if I can incorporate it into the next LOVD 2.0 release.