LOVD 2.0

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FS#56 - ability to import multi-gene variants for high throughput tests

Attached to Project: LOVD 2.0
Opened by Ammar Husami (husamia) - Wednesday, 16 May 2012, 20:48 GMT+1
Last edited by Ivo F.A.C. Fokkema (ifokkema) - Wednesday, 16 May 2012, 22:38 GMT+1
Task Type Feature Request
Category Backend / Core → Variant submission
Status Closed
Assigned To Ivo F.A.C. Fokkema (ifokkema)
Operating System All
Severity Medium
Priority Normal
Reported Version 2.0-34
Due in Version Undecided
Due Date Undecided
Percent Complete 100%
Votes 0
Private No


Title: feature request to import variants reports often generated by high throughput technology such as next generation sequencing etc
Description of the problem: the current filed of genetic testing is moving from single gene testing to multi gene testing where handful of gene variants are reported at once. The current LOVD submission scheme is limited to uploading single gene variants. Thus if I have variants for 50 samples for 24 genes, the most efficient way is to create variant import file for each gene adding considerable time to the submission process while it is technically possible to do in one step
solution: add subsection to /config_import.php to identify gene and separate variant tables based on gene symbol allowing import of multiple genes from one file
This task depends upon

Closed by  Ivo F.A.C. Fokkema (ifokkema)
Wednesday, 16 May 2012, 22:38 GMT+1
Reason for closing:  Implemented
Comment by Ivo F.A.C. Fokkema (ifokkema) - Wednesday, 16 May 2012, 22:37 GMT+1
  • Field changed: Status (Assigned → Delayed until 3.0)
  • Field changed: Category (Backend / Core → Variant submission)
  • Field changed: Percent Complete (0% → 100%)
Thank you for your report. This functionality has been introduced in LOVD 3.0 beta 03, released March 28th this year. We currently do not have an automated way to upgrade an LOVD 2.0 database to LOVD 3.0 yet, but please keep an eye on our website for more information: http://www.LOVD.nl/3.0/news