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LOVD v.3.0 - Leiden Open Variation Database
Online gene-centered collection and display of DNA variants
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List of public LOVD installations
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If you are looking for a specific gene database, please also check our list of LSDBs. |
Please note that the latest available build is always installed on our Leiden server. We offer free use of this LOVD installation for those interested, e.g. to maintain/start a LSDB. Contact us for more information.
You can also download this list to see the complete list of genes in the databases.
In total: 1,249,023,259 variants (6,572,581 unique) in 5,497,827 individuals in 78 LOVD installations. |
http://bipmed.iqm.unicamp.br/snparray_296/ |
LOVD 3.0-21 |
16643 genes |
267838856 variants |
BIPMed SNP Array - HG38 |
A1BG-AS1,A1CF,A2M,A2M-AS1,A2ML1,A2MP1,A3GALT2,A4GALT,A4GN... |
895813 unique |
http://bipmed.iqm.unicamp.br/snparray_hg19/ |
LOVD 3.0-21 |
15440 genes |
267807776 variants |
BIPMed SNP Array - HG19 |
A1CF,A2M,A2M-AS1,A2ML1,A2MP1,A3GALT2,A4GALT,A4GNT,AACS,AA... |
893557 unique |
http://www.genomed.org/lovd3/ |
LOVD 3.0-20a |
113 genes |
223050652 variants |
DIAN DIAGNOSTICS & Zhejiang University Center for Genetic and Genomic Medicine (ZJU-CGGM) |
ABCC9,ACTC1,ACTN2,AKAP9,ANK2,APC,AXIN2,BARD1,BCL11A,BRCA1... |
380 unique |
http://bipmed.iqm.unicamp.br/snparray/ |
LOVD 3.0-20 |
17391 genes |
222715116 variants |
BIPMed SNP Array |
A1BG-AS1,A1CF,A2M,A2M-AS1,A2ML1,A2MP1,A3GALT2,A4GALT,A4GN... |
902273 unique |
http://bipmed.iqm.unicamp.br/wes_hg19/ |
LOVD 3.0-21 |
18202 genes |
197345407 variants |
BIPMed WES - HG19 |
A1BG,A1CF,A2M,A2M-AS1,A2ML1,A3GALT2,A4GALT,A4GNT,AAAS,AAC... |
824599 unique |
http://bipmed.iqm.unicamp.br/ |
LOVD 3.0-20 |
20930 genes |
66158522 variants |
BIPMed WES |
A1BG,A1BG-AS1,A1CF,A2M,A2M-AS1,A2ML1,A2MP1,A3GALT2,A4GALT... |
622610 unique |
http://databases.lovd.nl/whole_genome/ |
LOVD 3.0-20a |
22002 genes |
1998175 variants |
Whole genome datasets |
A1BG,A1BG-AS1,A1CF,A2M,A2M-AS1,A2ML1,A2MP1,A4GALT,A4GNT,A... |
1998135 unique |
https://databases.lovd.nl/shared/ |
LOVD 3.0-21c |
22985 genes |
1405308 variants |
Global Variome shared LOVD |
A1BG,A1BG-AS1,A1CF,A2LD1,A2M,A2M-AS1,A2ML1,A2MP1,A3GALT2,... |
188278 unique |
http://proteomics.bio21.unimelb.edu.au/lovd/ |
LOVD 3.0-07 |
14772 genes |
239690 variants |
LOVD - Leiden Open Variation Database |
A1BG,A1BG-AS1,A1CF,A2M,A2ML1,A4GALT,A4GNT,AAAS,AACS,AACSP... |
152241 unique |
http://bipmed.iqm.unicamp.br/cfa/ |
LOVD 3.0-20 |
41 genes |
134333 variants |
Craniofacial anomalies |
APOC2,APOC4-APOC2,AXIN2,BCL3,BMP4,CLPTM1,DVL2,ERBB2,FGF22... |
257 unique |
https://ab-openlab.csir.res.in/mitolsdb/ |
LOVD 2.0-35 |
37 genes |
112662 variants |
MitoLSDB |
MTATP6,MTATP8,MTCO1,MTCO2,MTCO3,MTCYB,MTND1,MTND2,MTND3,M... |
4660 unique |
http://www.insight-database.org/ |
LOVD 3.0-21 |
15 genes |
36434 variants |
International Society for Gastrointestinal Hereditary Tumours Database |
APC,BMPR1A,FBXO11,GALNT12,MLH1,MLH3,MSH2,MSH3,MSH6,MUTYH,... |
5756 unique |
http://HCI-LOVD.hci.utah.edu |
LOVD 2.0-33 |
8 genes |
26167 variants |
LOVD - human mismatch repair genes |
MLH1,MLH1_priors,MSH2,MSH2_priors,MSH6,MSH6_priors,PMS2,P... |
26167 unique |
https://grenada.lumc.nl/LOVD2/Usher_montpellier/ |
LOVD 2.0-36 |
20 genes |
23521 variants |
Retinal and hearing impairment genetic mutation database |
CDH23,CEACAM16,CERKL,CHM,CLDN14,CLRN1,GPR98,MYO15A,MYO6,M... |
3656 unique |
http://grenada.lumc.nl/LOVD2/mendelian_genes/ |
LOVD 2.0-36 |
100 genes |
22811 variants |
Mendelian genes |
ABO,ADAMTSL2,AIRE,AKNAD1,ALG1,ALG12,ALG3,ALG6,ALG8,ALG9,A... |
3080 unique |
http://chromium.lovd.nl/LOVD2/TSC/ |
LOVD 2.0-36 |
2 genes |
20319 variants |
Tuberous sclerosis database |
TSC1,TSC2 |
3970 unique |
http://www.genomed.org/lovd2/ |
LOVD 2.0-35 |
111 genes |
16074 variants |
DIAN DIAGNOSTICS & Zhejiang University Center for Genetic and Genomic Medicine (ZJU-CGGM) |
ABCC9,ACTC1,ACTN2,AKAP9,ANK2,APC,AXIN2,BARD1,BCL11A,BRCA1... |
10207 unique |
https://mseqdr.org/MITO/ |
LOVD 3.0-21 |
1607 genes |
14092 variants |
MSeqDR-LSDB Mitochondrial Disease Locus Specific Database |
AADAT,AARS2,AASS,ABAT,ABCA13,ABCA9,ABCB10,ABCB6,ABCB7,ABC... |
11900 unique |
http://grenada.lumc.nl/LOVD2/diabetes/ |
LOVD 2.0-36 |
3 genes |
9791 variants |
Monogenic Diabetes |
GCK,HNF1A,HNF4A |
691 unique |
http://bioinf.suda.edu.cn/NDDvarbase/LOVDv.3.0/ |
LOVD 3.0-13 |
289 genes |
6374 variants |
NDDVD - Neurodegenerative Diseases Variation Database |
ABCA7,ABCB1,ADCY5,ADORA1,ADRA1A,AFG3L2,AGBL3,ALS2,ANG,ANK... |
4959 unique |
http://www.inc.gob.ar/sither/ |
LOVD 3.0-19 |
42 genes |
5433 variants |
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AKT1,APC,ATM,BAP1,BARD1,BLM,BMPR1A,BRCA1,BRCA2,BRIP1,CDH1... |
576 unique |
https://oi.gene.le.ac.uk/ |
LOVD 2.0-36 |
20 genes |
4324 variants |
Osteogenesis Imperfecta Variant Database |
BMP1,COL1A1,COL1A2,CREB3L1,CRTAP,FAM46A,FKBP10,IFITM5,P3H... |
2106 unique |
https://lovd.euro-wabb.org/ |
LOVD 2.0-36 |
23 genes |
3578 variants |
EURO-WABB PROJECT OPEN VARIATION DATABASE |
ALMS1,ARL6,BBIP1,BBS1,BBS10,BBS12,BBS2,BBS4,BBS5,BBS7,BBS... |
1131 unique |
http://databases.lovd.nl/DNA_profiles/ |
LOVD 3.0-20a |
0 genes |
3414 variants |
LOVD - Leiden Open Variation Database |
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667 unique |
http://rb1-lovd.d-lohmann.de/ |
LOVD 2.0-34 |
1 gene |
3395 variants |
rb1-lsdb |
RB1 |
1752 unique |
http://lovd.bx.psu.edu/ |
LOVD 2.0-36 |
37 genes |
2300 variants |
The Globin Gene Server |
ALOX5AP,AQP9,ARG2,ASS1,ATRX,BCL11A,CNTNAP2,CSNK2A1,EPAS1,... |
2241 unique |
http://lsdb.hgu.mrc.ac.uk/ |
LOVD 2.0-30 |
11 genes |
1903 variants |
MRC Human Genetics Unit LOVD at MRC IGMM |
MLYCD,NIPBL,OTX2,PAX6,RAB18,RAB3GAP1,RAB3GAP2,RPGR,SMC1A,... |
1111 unique |
http://grenada.lumc.nl/LOVD2/VWF/ |
LOVD 2.0-36 |
1 gene |
1728 variants |
EAHAD Coagulation Factor Variant Databases |
VWF |
713 unique |
https://eds.gene.le.ac.uk/ |
LOVD 2.0-36 |
13 genes |
1706 variants |
Ehlers Danlos Syndrome Variant Database |
ADAMTS2,AEBP1,B3GALT6,B4GALT7,CHST14,COL3A1,COL5A1,COL5A2... |
1057 unique |
http://secure.ngrl.org.uk/LOVDv.2.0/ |
LOVD 2.0-28 |
5 genes |
1404 variants |
NGRL, Manchester LOVD |
CHM,KDM6A,L1CAM,MLL2,UBE3A |
540 unique |
http://grenada.lumc.nl/LOVD2/TPI/ |
LOVD 2.0-36 |
9 genes |
1127 variants |
Parkinson's disease Mutation Database |
ATXN2,DNAJC13,GBA,LRRK2,PARK2,PARK7,PINK1,SNCA,VPS35 |
983 unique |
http://www.dbpex.org/ |
LOVD 2.0-30 |
13 genes |
1081 variants |
dbPEX, PEX Gene Database |
PEX1,PEX10,PEX12,PEX13,PEX14,PEX16,PEX19,PEX2,PEX26,PEX3,... |
389 unique |
http://mseqdr.lumc.edu/GEDI/ |
LOVD 3.0-08 |
298 genes |
1012 variants |
The Genetic Eye Disorder (GEDI) Variation Database |
ABCA4,ABCC6,ABHD12,ADAM9,ADAMTS18,AFG3L1P,AHI1,AIP,AIPL1,... |
981 unique |
http://hgddatabase.cvtisr.sk/ |
LOVD 2.0-36 |
1 gene |
900 variants |
HGD mutation database |
HGD |
211 unique |
http://mitodyn.org/ |
LOVD 2.0-36 |
2 genes |
813 variants |
MITOchondrial DYNamics variation pages |
GDAP1,OPA1 |
418 unique |
http://143.169.238.105/LOVD/ |
LOVD 3.0-16 |
6 genes |
713 variants |
Loeys-Dietz Syndrome Mutation Database |
SMAD2,SMAD3,TGFB2,TGFB3,TGFBR1,TGFBR2 |
328 unique |
http://hci-exlovd.hci.utah.edu/ |
LOVD 2.0-22 |
3 genes |
659 variants |
Database of BRCA1 and BRCA2 sequence variants that have been clinically reclassified using a quantit |
BRCA1,BRCA1fx,BRCA2 |
512 unique |
https://coppolalab.ucla.edu/lovd_gift/ |
LOVD 3.0-21 |
11 genes |
634 variants |
Coppola Lab - GIFT Variant Database |
APP,C9orf72,CHMP2B,FUS,GRN,MAPT,PSEN1,PSEN2,TARDBP,TBK1,VCP |
585 unique |
https://grenada.lumc.nl/LOVD2/MD/ |
LOVD 2.0-36 |
1 gene |
510 variants |
Menkes Disease |
ATP7A |
323 unique |
http://www.dbagenes.unito.it/ |
LOVD 2.0-36 |
13 genes |
399 variants |
Diamond-Blackfan Anemia |
GATA1,RPL11,RPL15,RPL26,RPL31,RPL35A,RPL5,RPS10,RPS17,RPS... |
256 unique |
http://grenada.lumc.nl/LOVD2/WS/ |
LOVD 2.0-36 |
5 genes |
368 variants |
LOVD - Leiden Open Variation Database |
EDN3,EDNRB,MITF,PAX3,SOX10 |
291 unique |
http://dna2.leeds.ac.uk/LOVD/ |
LOVD 3.0-13 |
19 genes |
335 variants |
LOVD - Leiden Open Variation Database |
ACPT,AMBN,AMELX,AMTN,C4orf26,COL17A1,DLX3,ENAM,FAM20A,FAM... |
218 unique |
https://grenada.lumc.nl/LOVD2/ARC/ |
LOVD 2.0-36 |
2 genes |
333 variants |
LOVD - Leiden Open Variation Database |
VIPAR,VPS33B |
251 unique |
http://grenada.lumc.nl/LOVD2/ROR/ |
LOVD 2.0-36 |
2 genes |
291 variants |
LOVD 2.0 - ROR genes |
ROR1,ROR2 |
55 unique |
http://80.211.174.221 |
LOVD 3.0-21 |
2 genes |
287 variants |
LOVD - Leiden Open Variation Database |
PKD1,PKD2 |
2 unique |
https://grenada.lumc.nl/LOVD2/PAX2/ |
LOVD 2.0-36 |
1 gene |
263 variants |
PAX2 variant database |
PAX2 |
92 unique |
http://vitivar.igib.res.in/ |
LOVD 3.0-13 |
322 genes |
254 variants |
VitiVar - Compendium of genes and variants associated with vitiligo |
ACTA2,ADCY2,AHR,ANKRD12,APBA2,APEX1,APOD,AQP3,ARID5B,ARNT... |
254 unique |
http://diabetes-insipidus.org/ |
LOVD 3.0-19 |
3 genes |
213 variants |
LOVD - Leiden Open Variation Database |
AQP2,AVP,AVPR2 |
131 unique |
http://grenada.lumc.nl/LOVD2/ctx/ |
LOVD 2.0-36 |
1 gene |
213 variants |
Cerebrotendinous Xanthomatosis |
CYP27A1 |
69 unique |
https://lovd3.isciii.es/ |
LOVD 3.0-11 |
31 genes |
188 variants |
SpainMDB |
ABCD1,APC,ATP7B,BRAF,BRCA1,BRCA2,BSND,CFTR,CYP27A1,DMD,GH... |
137 unique |
https://grenada.lumc.nl/LOVD2/NIH/eyegene/ |
LOVD 2.0-36 |
4 genes |
186 variants |
LOVD - Leiden Open Variation Database |
CHM,PRPF8,RB1,RHO |
73 unique |
https://drdb.gene.le.ac.uk/ |
LOVD 2.0-36 |
4 genes |
184 variants |
Death Receptor Database (DRdb) |
TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D |
144 unique |
http://bipmed.iqm.unicamp.br/BRCA-challenge/ |
LOVD 3.0-20 |
2 genes |
180 variants |
BRCA Challenge - BRAZIL |
BRCA1,BRCA2 |
158 unique |
http://grenada.lumc.nl/LOVD2/amc/ |
LOVD 2.0-36 |
1 gene |
171 variants |
LOVD - Leiden Open Variation Database |
PORCN |
119 unique |
https://grenada.lumc.nl/LOVD2/uni-hd/5-HT/ |
LOVD 2.0-36 |
5 genes |
170 variants |
University of Heidelberg Serotonin receptor variant database |
HTR3A,HTR3B,HTR3C,HTR3D,HTR3E |
73 unique |
http://db.cshg.org.cy/ |
LOVD 3.0-17 |
44 genes |
86 variants |
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APC,APCS,ATP6V1B1,BRCA1,BRCA2,C1QA,C1QC,CFH,CFHR5,CFTR,CO... |
83 unique |
http://www.genetik-regensburg.de/LOVDv.3.0/ |
LOVD 3.0-16 |
45 genes |
68 variants |
Labor Staber Humangenetik |
AIP,ATM,ATP7B,ATXN3,BRCA1,BRCA2,BRIP1,CDH1,CFTR,CHEK2,CPA... |
66 unique |
http://bipmed.iqm.unicamp.br/neurofibromatosis/ |
LOVD 3.0-21 |
2 genes |
66 variants |
BIPMed - Neurofibromatosis |
NF1,NF2 |
66 unique |
http://bipmed.iqm.unicamp.br/deafness/ |
LOVD 3.0-21 |
13 genes |
60 variants |
Hereditary Hearing Loss Database |
CDH23,GJB2,GJB3,GJB6,MT-RNR1,MT-TA,MT-TK,MT-TS1,MT-TS2,MT... |
59 unique |
http://dna2.leeds.ac.uk/GRK1_LOVD/ |
LOVD 3.0-18 |
1 gene |
59 variants |
LOVD - Leiden Open Variation Database |
GRK1 |
23 unique |
http://www.icp.ucl.ac.be/vikkula/CLPdb/ |
LOVD 2.0-36 |
1 gene |
54 variants |
Cleft Lip and Palate Mutation Database |
IRF6 |
44 unique |
http://bipmed.iqm.unicamp.br/tuberous-sclerosis/ |
LOVD 3.0-17 |
2 genes |
45 variants |
BIPMed - Variants in tuberous sclerosis patients from Brazil |
TSC1,TSC2 |
44 unique |
http://ibio-cn.org |
LOVD 2.0-31 |
1 gene |
30 variants |
Canavan Disease_NDDMD |
ASPA |
22 unique |
https://grenada.lumc.nl/LOVD2/TCS/ |
LOVD 2.0-36 |
2 genes |
26 variants |
Treacher Collins syndrome variant database |
POLR1C,POLR1D |
22 unique |
http://bipmed.iqm.unicamp.br/epileptic-encephalopathy/ |
LOVD 3.0-20 |
1 gene |
16 variants |
BIPMed - Epileptic Encephalopathy |
SCN1A |
16 unique |
http://genet.ir/variome/ |
LOVD 3.0-14 |
9063 genes |
0 variants |
Iran Variation Database |
A2M,A2ML1,A4GALT,AACS,AADACL2,AADAT,AAGAB,AAK1,AAR2,AARD,... |
0 unique |
http://grenada.lumc.nl/LOVD2/vumc/ |
LOVD 2.0-36 |
7 genes |
0 variants |
LOVD - Leiden Open Variation Database |
ALDH5A1,ASPA,D2HGDH,GAMT,GATM,L2HGDH,SLC6A8 |
0 unique |
https://grenada.lumc.nl/LOVD2/CILD/ |
LOVD 2.0-36 |
5 genes |
0 variants |
Primary Ciliary Dyskinesia variant database |
DNAAF1,DNAH11,DNAH5,DNAI1,DNAI2 |
0 unique |
http://bipmed.iqm.unicamp.br/gg2020/ |
LOVD 3.0-20 |
1 gene |
0 variants |
BIPMed - GG2020 - Beta thalassemia |
HBB |
0 unique |
http://l3.d-lohmann.de/ |
LOVD 3.0-18 |
1 gene |
0 variants |
Essen-Eye-Cancer-Genetics |
RB1 |
0 unique |
http://grenada.lumc.nl/LOVD2/L1CAM/ |
LOVD 2.0-36 |
1 gene |
0 variants |
LOVD - Leiden Open Variation Database |
L1CAM |
0 unique |
http://www.dmd.nl/nmdb2/ |
LOVD 2.0-36 |
0 genes |
0 variants |
Leiden Muscular Dystrophy pages |
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0 unique |
https://grenada.lumc.nl/LOVD2/CDG/ |
LOVD 2.0-36 |
0 genes |
0 variants |
Congenital disorders of glycosylation (CDG) |
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0 unique |
https://fogellab.neurology.ucla.edu/lovd/ |
LOVD 3.0-21 |
0 genes |
0 variants |
LOVD - Leiden Open Variation Database |
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0 unique |
http://grenada.lumc.nl/LOVD2/ARVC/ |
LOVD 2.0-36 |
0 genes |
0 variants |
ARVD/C Genetic Variants Database |
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0 unique |
http://bipmed.iqm.unicamp.br/lupus/ |
LOVD 3.0-21 |
0 genes |
0 variants |
BIPMed Lupus - HG38 |
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0 unique |
http://chromium.lovd.nl/LOVD2/ |
LOVD 2.0-36 |
0 genes |
0 variants |
LOVD - Leiden Open Variation Database |
|
0 unique |
http://brca.iarc.fr/LOVD/ |
LOVD 2.0-22 |
? genes |
? variants |
LOVD - IARC |
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? unique |
(This list is updated daily and shows LOVD 2.0 and 3.0 installations active for the last three months that have the "include in the global LOVD listing" setting enabled. Please allow one day for changes to take effect. Also, known 1.1.0 installations have been added.)
Last modified 2017/07/24 14:23:43 CEST |
When using or discussing LOVD please refer to:
Fokkema IF, Taschner PE, Schaafsma GC, Celli J, Laros JF, den Dunnen JT (2011). LOVD v.2.0: the next generation in gene variant databases.
Hum Mutat. 2011 May;32(5):557-63.
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