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LOVD v.3.0 - Leiden Open Variation Database
Online gene-centered collection and display of DNA variants
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LOVD 3.0 News
| LOVD 3.0 build 26 released |
Ivo Fokkema, 2021-02-22 |
Today, LOVD 3.0 build 26 has been released.
New features implemented, amongst others:
Added an "LOVD light" switch, allowing large databases to easily enable database optimizations;
Improved imported frequencies (the "average frequency" field);
LOVD will now automatically add the Entrez ID and OMIM ID to genes that don't have these IDs filled in, when any user edits the gene.
Bugs fixed, amongst others:
Fixed query error when creating or editing an entry and leaving a decimal field empty;
Fixed bug; HGNC IDs weren't handled well in the submission API;
Fixed the link from the Diseases detailed view to HPO;
Fixed reCAPTCHA for users in China;
Fixed problems with part of the API;
Fixed problems with MySQL 8.0.x.
Closes #480, #482, #483, #488, #489, #492, #495 and #497.
See the changelog.
Download the new build.
LOVD scripts included: LOVD2 file converter 3.0-22, Reading Frame Checker 3.0-22, RefSeqParser 3.0-22, Variant position fixer 3.0-20, Variant Validation 3.0-25.
Manual version included: October 12th, 2020. |
| LOVD 3.0 build 25 released |
Ivo Fokkema, 2020-10-22 |
Today, LOVD 3.0 build 25 has been released.
New features implemented, amongst others:
Added the possibility to download entire submissions;
Improved the "forgot your password" feature;
Added feature to merge entries (Individuals, Screenings);
Improved page titles by adding details to them;
Improved the submission API to allow variant-only submissions and to directly process submissions if configured to do so;
Extended search capabilities by allowing searching for prefix or suffix;
Added a link to MobiDetails, an annotation platform dedicated to the interpretation of DNA variants.
Bugs fixed, amongst others:
Fixed link to the Ensembl and NCBI genome browsers;
Fixed bug; The feature to map a variant to the genome didn't always work;
Fixed incomplete grouping of variants in the unique variants view for large data sets.
Closes #435, #436, #437, #438, #439, #444, #448, #450, #452, #454, #455, #457, #460, #462, #464, #466, #469 and #471.
See the changelog.
Download the new build.
LOVD scripts included: LOVD2 file converter 3.0-22, Reading Frame Checker 3.0-22, RefSeqParser 3.0-22, Variant position fixer 3.0-20, Variant Validation 3.0-25.
Manual version included: October 12th, 2020. |
| LOVD 3.0 build 24 released |
Ivo Fokkema, 2020-07-13 |
Today, LOVD 3.0 build 24 has been released.
New features implemented, amongst others:
Added new features to allow Curators and up to more quickly curate new data;
APIs and views now sort transcripts based on the number of variants they contain;
Several improvements to the submission API;
Created a variant verification script using the Variant Validator service;
Removed additional variant effect values that were added in 3.0-20 - they will be replaced by new clinical classification columns;
Improved the "forgot my password" feature.
Bugs fixed, amongst others:
The entered IP value to restrict an account was not validated when registering a new account;
The JSON variant API wasn't selecting data properly;
The registration spam filter rejected too many real registrations.
Closes #113, #225, #284, #420, #428, #430 and #432.
See the changelog.
Download the new build.
LOVD scripts included: LOVD2 file converter 3.0-22, Reading Frame Checker 3.0-22, RefSeqParser 3.0-22, Variant position fixer 3.0-20, Variant Validation 3.0-24.
Manual version included: July 13th, 2020. |
News older than 12 months can be found in the archive.
| Last modified 2021/02/22 14:07:26 CET |
When using or discussing LOVD please refer to:
Fokkema IF, Taschner PE, Schaafsma GC, Celli J, Laros JF, den Dunnen JT (2011). LOVD v.2.0: the next generation in gene variant databases.
Hum Mutat. 2011 May;32(5):557-63.
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