LOVD 3.0 News

LOVD 3.0 build 27 released Ivo Fokkema, 2021-08-17
Today, LOVD 3.0 build 27 has been released.
New features implemented, amongst others: Implemented data licensing, data submissions can now be licensed by data owners, so it is clear for every user of LOVD what can, and what can not, be done with the data deposited in LOVD; Added the GA4GH Data Discovery API to LOVD3, this is a full LOVD3-specific implementation of the GA4GH Data Discovery standards; Explain inheritance codes on the Diseases detailed view, instead of showing the abbreviations only; Improved security in various ways; Also Curators and higher will now need to provide a reported Variant effect when publishing variants.
Bugs fixed, amongst others: Fixed bug in page titles when creating a new variant for a screening; Fixed bugs in the password reset feature; Fixed problems with genes not supported by Mutalyzer by using VV as a backup; Fixed various security issues; Fixed issues with importing data.
Closes #484, #502, #505, #507, #513, #515, #518, #527, #533, #537, #539 and #542.

See the changelog.
Download the new build.
LOVD scripts included: LOVD2 file converter 3.0-22, Reading Frame Checker 3.0-22, RefSeqParser 3.0-22, Variant position fixer 3.0-20, Variant Validation 3.0-25.
Manual version included: June 15th, 2021.

LOVD 3.0 build 26 released Ivo Fokkema, 2021-02-22
Today, LOVD 3.0 build 26 has been released.
New features implemented, amongst others: Added an "LOVD light" switch, allowing large databases to easily enable database optimizations; Improved imported frequencies (the "average frequency" field); LOVD will now automatically add the Entrez ID and OMIM ID to genes that don't have these IDs filled in, when any user edits the gene.
Bugs fixed, amongst others: Fixed query error when creating or editing an entry and leaving a decimal field empty; Fixed bug; HGNC IDs weren't handled well in the submission API; Fixed the link from the Diseases detailed view to HPO; Fixed reCAPTCHA for users in China; Fixed problems with part of the API; Fixed problems with MySQL 8.0.x.
Closes #480, #482, #483, #488, #489, #492, #495 and #497.

See the changelog.
Download the new build.
LOVD scripts included: LOVD2 file converter 3.0-22, Reading Frame Checker 3.0-22, RefSeqParser 3.0-22, Variant position fixer 3.0-20, Variant Validation 3.0-25.
Manual version included: October 12th, 2020.

News older than 12 months can be found in the archive.

Last modified 2021/08/17 15:46:03 CEST

When using or discussing LOVD please refer to:
Fokkema IF, Kroon M, López Hernández JA, Asscheman D, Lugtenburg I, Hoogenboom J, den Dunnen JT. The LOVD3 platform: efficient genome-wide sharing of genetic variants. Eur J Hum Genet (2021). https://doi.org/10.1038/s41431-021-00959-x.

A recommended system of the Human Variome Project LOVD has received funding from the European Community's Seventh Framework Programme
(FP7/2007-2013) under grant agreement nº 200754 - the GEN2PHEN project.
©2004-2022 Leiden University Medical Center, Netherlands
Ivo F.A.C. Fokkema BSc., Prof. Johan T. den Dunnen PhD
A IRDiRC recognized resource