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LOVD v.3.0 - Leiden Open Variation Database
Online gene-centered collection and display of DNA variants
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LOVD 3.0 News
| Several services affected after a server upgrade |
Ivo Fokkema, 2024-07-16 |
After a server upgrade last weekend, several services ceased to work normally from Sunday evening to Tuesday afternoon (Central European Time).
Even though several services were tested after the server upgrade, this test was not complete and we didn't detect that some of the services were failing until we were notified by one of our users.
The central shared LOVD instance was working normally.
If you have been affected by this downtime, we apologize for the inconvenience. |
| LOVD 3.0 build 30 released |
Ivo Fokkema, 2024-05-30 |
Today, LOVD 3.0 build 30 has been released.
New features implemented, amongst others:
Updated the VariantValidator library and now using VariantValidator to fetch transcript information;
Improved the connectivity debugging script;
Made all date fields publicly visible;
Added several improvements to the submission API;
Major improvements to the HGVS functions.
Removed features:
Removed the LRG functionality;
Removed the SeattleSeq feature.
Bugs fixed, amongst others:
Fixed bug in the checkHGVS script;
Fixed several notices and warnings occurring with unexpected input;
Fixed an incorrect table name in code handling the deletion of an individual;
Updated code to handle newer PHP versions;
Fixed various bugs in the mapper;
Fixed position matching in the LOVD2-style API;
Fixed broken links to Orphanet, they changed their URL structure;
Fixed variant page titles — the GENE(NM):c format is not valid.
Closes #639 and #645.
See the changelog.
Download the new build.
LOVD scripts included: LOVD2 file converter 3.0-29, Reading Frame Checker 3.0-28, RefSeqParser 3.0-29, Variant position fixer 3.0-29, Variant Validation 3.0-30.
Manual version included: May 30th, 2024. |
News older than 12 months can be found in the archive.
| Last modified 2024/07/17 15:35:09 CEST |
When using or discussing LOVD please refer to:
Fokkema IF, Kroon M, López Hernández JA, Asscheman D, Lugtenburg I, Hoogenboom J, den Dunnen JT.
The LOVD3 platform: efficient genome-wide sharing of genetic variants.
Eur J Hum Genet (2021).
https://doi.org/10.1038/s41431-021-00959-x.
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