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LOVD v.3.0 - Leiden Open Variation Database
Online gene-centered collection and display of DNA variants
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List of public LOVD installations
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If you are looking for a specific gene database, please also check our list of LSDBs. |
Please note that the latest available build is always installed on our Leiden server. We offer free use of this LOVD installation for those interested, e.g. to maintain/start a LSDB. Contact us for more information.
You can also download this list to see the complete list of genes in the databases.
| In total: 1,082,081,315 variants in 1,777,972 individuals in 43 LOVD installations. |
| http://bipmed.iqm.unicamp.br/snparray_296/ |
LOVD 3.0-21 |
16645 genes |
307652740 variants |
| BIPMed SNP Array - HG38 |
A1BG-AS1,A1CF,A2M,A2M-AS1,A2ML1,A2MP1,A3GALT2,A4GALT,A4GN... |
895813 unique |
| http://bipmed.iqm.unicamp.br/snparray_hg19/ |
LOVD 3.0-21 |
15440 genes |
267807776 variants |
| BIPMed SNP Array - HG19 |
A1CF,A2M,A2M-AS1,A2ML1,A2MP1,A3GALT2,A4GALT,A4GNT,AACS,AA... |
893557 unique |
| http://bipmed.iqm.unicamp.br/snparray/ |
LOVD 3.0-20 |
17391 genes |
222715116 variants |
| BIPMed SNP Array |
A1BG-AS1,A1CF,A2M,A2M-AS1,A2ML1,A2MP1,A3GALT2,A4GALT,A4GN... |
902273 unique |
| http://bipmed.iqm.unicamp.br/wes_hg19/ |
LOVD 3.0-21 |
18203 genes |
213033954 variants |
| BIPMed WES - HG19 |
A1BG,A1CF,A2M,A2M-AS1,A2ML1,A3GALT2,A4GALT,A4GNT,AAAS,AAC... |
824599 unique |
| http://bipmed.iqm.unicamp.br/ |
LOVD 3.0-20 |
20930 genes |
66158522 variants |
| BIPMed WES |
A1BG,A1BG-AS1,A1CF,A2M,A2M-AS1,A2ML1,A2MP1,A3GALT2,A4GALT... |
622610 unique |
| https://databases.lovd.nl/shared/ |
LOVD 3.0-28 |
23029 genes |
2327354 variants |
| Global Variome shared LOVD |
A1BG,A1BG-AS1,A1CF,A2LD1,A2M,A2M-AS1,A2ML1,A2MP1,A3GALT2,... |
384377 unique |
| https://databases.lovd.nl/whole_genome/ |
LOVD 3.0-20a |
22002 genes |
1998175 variants |
| Whole genome datasets |
A1BG,A1BG-AS1,A1CF,A2M,A2M-AS1,A2ML1,A2MP1,A4GALT,A4GNT,A... |
1998135 unique |
| http://bipmed.iqm.unicamp.br/cfa/ |
LOVD 3.0-20 |
41 genes |
134333 variants |
| Craniofacial anomalies |
APOC2,APOC4-APOC2,AXIN2,BCL3,BMP4,CLPTM1,DVL2,ERBB2,FGF22... |
257 unique |
| https://ab-openlab.csir.res.in/mitolsdb/ |
LOVD 2.0-35 |
37 genes |
112662 variants |
| MitoLSDB |
MTATP6,MTATP8,MTCO1,MTCO2,MTCO3,MTCYB,MTND1,MTND2,MTND3,M... |
4660 unique |
| http://ithaka.rrp.demokritos.gr/CanVaS/ |
LOVD 3.0-23 |
98 genes |
36951 variants |
| CanVaS - A Greek Cancer Patient Genetic Variation Resource |
AIP,ALK,APC,ATM,BAP1,BARD1,BLM,BMPR1A,BRCA1,BRCA2,BRIP1,B... |
8213 unique |
| http://HCI-LOVD.hci.utah.edu |
LOVD 2.0-33 |
8 genes |
26167 variants |
| LOVD - human mismatch repair genes |
MLH1,MLH1_priors,MSH2,MSH2_priors,MSH6,MSH6_priors,PMS2,P... |
26167 unique |
| https://grenada.lumc.nl/LOVD2/Usher_montpellier/ |
LOVD 2.0-37 |
20 genes |
23521 variants |
| Retinal and hearing impairment genetic mutation database |
CDH23,CEACAM16,CERKL,CHM,CLDN14,CLRN1,GPR98,MYO15A,MYO6,M... |
3656 unique |
| https://mseqdr.org/MITO/ |
LOVD 3.0-21 |
1628 genes |
17310 variants |
| MSeqDR-LSDB Mitochondrial Disease Locus Specific Database |
AADAT,AARS2,AASS,ABAT,ABCA13,ABCA9,ABCB10,ABCB6,ABCB7,ABC... |
15004 unique |
| http://www.inc.gob.ar/sither/ |
LOVD 3.0-28 |
94 genes |
8899 variants |
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AIP,AKT1,ALK,APC,ASS1,ATM,AXIN2,BAP1,BARD1,BLM,BMPR1A,BRC... |
1277 unique |
| http://www.sysbio.org.cn/NDDVD/ |
LOVD 3.0-20a |
289 genes |
6374 variants |
| NDDVD - Neurodegenerative Diseases Variation Database |
ABCA7,ABCB1,ADCY5,ADORA1,ADRA1A,AFG3L2,AGBL3,ALS2,ANG,ANK... |
4959 unique |
| http://rb1-lovd.d-lohmann.de/ |
LOVD 2.0-34 |
1 gene |
3438 variants |
| rb1-lsdb |
RB1 |
1770 unique |
| http://databases.lovd.nl/DNA_profiles/ |
LOVD 3.0-27 |
0 genes |
3414 variants |
| LOVD - Leiden Open Variation Database |
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667 unique |
| http://www.kk.usm.my/LOVDv.3.0/ |
LOVD 3.0-27 |
308 genes |
3068 variants |
| Malaysian Node of the Human Variome Project Database |
ABCA1,ABCA12,ABCA5,ABCB1,ABCC2,ABCD1,ABCG8,ABL1,ACE,ADAM2... |
1602 unique |
| http://lovd.bx.psu.edu/ |
LOVD 2.0-38 |
37 genes |
2369 variants |
| The Globin Gene Server |
ALOX5AP,AQP9,ARG2,ASS1,ATRX,BCL11A,CNTNAP2,CSNK2A1,EPAS1,... |
2308 unique |
| http://lsdb.hgu.mrc.ac.uk/ |
LOVD 2.0-30 |
11 genes |
1903 variants |
| MRC Human Genetics Unit LOVD at MRC IGMM |
MLYCD,NIPBL,OTX2,PAX6,RAB18,RAB3GAP1,RAB3GAP2,RPGR,SMC1A,... |
1111 unique |
| http://hci-exlovd.hci.utah.edu/ |
LOVD 2.0-22 |
3 genes |
1822 variants |
| Database of BRCA1 and BRCA2 sequence variants that have been clinically reclassified using a quantit |
BRCA1,BRCA1fx,BRCA2 |
1850 unique |
| http://grenada.lumc.nl/LOVD2/VWF/ |
LOVD 2.0-37 |
1 gene |
1741 variants |
| EAHAD Coagulation Factor Variant Databases |
VWF |
715 unique |
| http://hgddatabase.cvtisr.sk/ |
LOVD 2.0-38 |
1 gene |
1419 variants |
| HGD mutation database |
HGD |
253 unique |
| https://coppolalab.ucla.edu/lovd_gift/ |
LOVD 3.0-21 |
11 genes |
634 variants |
| Coppola Lab - GIFT Variant Database |
APP,C9orf72,CHMP2B,FUS,GRN,MAPT,PSEN1,PSEN2,TARDBP,TBK1,VCP |
585 unique |
| http://www.dbagenes.unito.it/ |
LOVD 2.0-38 |
13 genes |
399 variants |
| Diamond-Blackfan Anemia |
GATA1,RPL11,RPL15,RPL26,RPL31,RPL35A,RPL5,RPS10,RPS17,RPS... |
256 unique |
| http://dna2.leeds.ac.uk/LOVD/ |
LOVD 3.0-13 |
20 genes |
366 variants |
| LOVD - Leiden Open Variation Database |
ACPT,AMBN,AMELX,AMTN,C4orf26,COL17A1,DLX3,ENAM,FAM20A,FAM... |
232 unique |
| https://lovd3.isciii.es/ |
LOVD 3.0-27 |
31 genes |
188 variants |
| SpainMDB |
ABCD1,APC,ATP7B,BRAF,BRCA1,BRCA2,BSND,CFTR,CYP27A1,DMD,GH... |
137 unique |
| http://bipmed.iqm.unicamp.br/BRCA-challenge/ |
LOVD 3.0-20 |
2 genes |
180 variants |
| BRCA Challenge - BRAZIL |
BRCA1,BRCA2 |
158 unique |
| http://www.genetik-regensburg.de/LOVDv.3.0/ |
LOVD 3.0-16 |
58 genes |
117 variants |
| Labor Staber Humangenetik |
ABCC8,AIP,ATM,ATP7B,ATXN3,BAP1,BLK,BRCA1,BRCA2,BRIP1,CDH1... |
112 unique |
| http://dna2.leeds.ac.uk/GRK1_LOVD/ |
LOVD 3.0-18 |
1 gene |
69 variants |
| LOVD - Leiden Open Variation Database |
GRK1 |
28 unique |
| http://bipmed.iqm.unicamp.br/neurofibromatosis/ |
LOVD 3.0-21 |
2 genes |
66 variants |
| BIPMed - Neurofibromatosis |
NF1,NF2 |
66 unique |
| http://bipmed.iqm.unicamp.br/deafness/ |
LOVD 3.0-21 |
13 genes |
60 variants |
| Hereditary Hearing Loss Database |
CDH23,GJB2,GJB3,GJB6,MT-RNR1,MT-TA,MT-TK,MT-TS1,MT-TS2,MT... |
59 unique |
| http://www.icp.ucl.ac.be/vikkula/CLPdb/ |
LOVD 2.0-36 |
1 gene |
54 variants |
| Cleft Lip and Palate Mutation Database |
IRF6 |
44 unique |
| http://bipmed.iqm.unicamp.br/GGE/ |
LOVD 3.0-21 |
1 gene |
53 variants |
| BIPMed - Genetic Generalized Epilepsy |
EFHC1 |
11 unique |
| http://bipmed.iqm.unicamp.br/tuberous-sclerosis/ |
LOVD 3.0-17 |
2 genes |
45 variants |
| BIPMed - Variants in tuberous sclerosis patients from Brazil |
TSC1,TSC2 |
44 unique |
| https://grenada.lumc.nl/LOVD2/TCS/ |
LOVD 2.0-37 |
2 genes |
26 variants |
| Treacher Collins syndrome variant database |
POLR1C,POLR1D |
22 unique |
| http://bipmed.iqm.unicamp.br/epileptic-encephalopathy/ |
LOVD 3.0-20 |
1 gene |
16 variants |
| BIPMed - Epileptic Encephalopathy |
SCN1A |
16 unique |
| http://chromium.lovd.nl/LOVD2/growth/ |
LOVD 2.0-37 |
1 gene |
12 variants |
| LOVD - Leiden Open Variation Database |
IGF1 |
5 unique |
| http://haemgen.haem.cam.ac.uk/lovd/ |
LOVD 3.0-09 |
2 genes |
2 variants |
| LOVD - Leiden Open Variation Database |
FGA,ITGA2B |
2 unique |
| http://urugenomes.org/lovd/ |
LOVD 3.0-21 |
1 gene |
0 variants |
| LOVD - Urugenomes |
DDX11L1 |
0 unique |
| http://l3.d-lohmann.de/ |
LOVD 3.0-18 |
1 gene |
0 variants |
| Essen-Eye-Cancer-Genetics |
RB1 |
0 unique |
| http://bipmed.iqm.unicamp.br/gg2020/ |
LOVD 3.0-20 |
1 gene |
0 variants |
| BIPMed - GG2020 - Beta thalassemia |
HBB |
0 unique |
| http://bipmed.iqm.unicamp.br/lupus/ |
LOVD 3.0-21 |
0 genes |
0 variants |
| BIPMed Lupus - HG38 |
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0 unique |
(This list is updated daily and shows LOVD 2.0 and 3.0 installations active for the last three months that have the "include in the global LOVD listing" setting enabled. Please allow one day for changes to take effect.)
| Last modified 2021/01/14 10:17:48 CET |
When using or discussing LOVD please refer to:
Fokkema IF, Kroon M, López Hernández JA, Asscheman D, Lugtenburg I, Hoogenboom J, den Dunnen JT.
The LOVD3 platform: efficient genome-wide sharing of genetic variants.
Eur J Hum Genet (2021).
https://doi.org/10.1038/s41431-021-00959-x.
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